© E.E.Allen ~ University of California, San Diego (2006-2008)
Juan A. Ugalde
Graduate Student
CV
CV
Education
2006, B.S. Molecular Biotechnology
Engineering. Universidad de Chile.
Publications Ugalde, J.A. Podell, S., Narasingarao, P., Allen E.A. Xenorhodopsins, an enimagtic new class of microbial rhodopsins horizontally transferred between Archaea and Bacteria. Biology Direct. 6:52. 2011.
Narasingarao, P., Podell, S., Ugalde, J.A., Brochier-Armanet, C., Emerson, J., Brocks, J.J., Heidelberg, K.B., Banfield, J.F., Allen, E.E. De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities. ISME Journal. Pubmed
Levican, G., Ugalde J.A., Ehrenfeld N., Maass A., Parada P. Comparative genomic analysis of carbon and nitrogen assimilation mechanisms in three indigenous bioleaching bacteria: predictions and validations. BMC Genomics. 9:581. 2008. Pubmed
Chang, B.S. Matz, M.V., Ugalde J.A. Applications of ancestral protein reconstruction in understanding protein function: GFP-like proteins. Methods in enzymology. 395:652-670. 2005. Pubmed
Ugalde, J.A. Chang, B.S., Matz, M.V. Evolution of coral colors recreated. Science. 305:1433. 2005. Pubmed
Shagin, D.A., Barsova, E.V., Yanushevich, Y.G., Fradkov, A.F., Lukyanov, K.A., Labas, Y.A., Semenova, T.N., Ugalde, J.A., Meyer, A., Nunes, J.M., Widder, E.A., Lukyanov, S.A., Matz, M.V. GFP-like proteins as ubiquitous Metazoan superfamily: evolution of functional features and structural complexity. Molecular Biology and Evolution. 21:841-850. 2004. Pubmed
Publications Ugalde, J.A. Podell, S., Narasingarao, P., Allen E.A. Xenorhodopsins, an enimagtic new class of microbial rhodopsins horizontally transferred between Archaea and Bacteria. Biology Direct. 6:52. 2011.
Narasingarao, P., Podell, S., Ugalde, J.A., Brochier-Armanet, C., Emerson, J., Brocks, J.J., Heidelberg, K.B., Banfield, J.F., Allen, E.E. De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities. ISME Journal. Pubmed
Levican, G., Ugalde J.A., Ehrenfeld N., Maass A., Parada P. Comparative genomic analysis of carbon and nitrogen assimilation mechanisms in three indigenous bioleaching bacteria: predictions and validations. BMC Genomics. 9:581. 2008. Pubmed
Chang, B.S. Matz, M.V., Ugalde J.A. Applications of ancestral protein reconstruction in understanding protein function: GFP-like proteins. Methods in enzymology. 395:652-670. 2005. Pubmed
Ugalde, J.A. Chang, B.S., Matz, M.V. Evolution of coral colors recreated. Science. 305:1433. 2005. Pubmed
Shagin, D.A., Barsova, E.V., Yanushevich, Y.G., Fradkov, A.F., Lukyanov, K.A., Labas, Y.A., Semenova, T.N., Ugalde, J.A., Meyer, A., Nunes, J.M., Widder, E.A., Lukyanov, S.A., Matz, M.V. GFP-like proteins as ubiquitous Metazoan superfamily: evolution of functional features and structural complexity. Molecular Biology and Evolution. 21:841-850. 2004. Pubmed
